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1.
Int Med Case Rep J ; 17: 167-175, 2024.
Artigo em Inglês | MEDLINE | ID: mdl-38504721

RESUMO

Introduction: Pancreatic cancer (PC) is among the deadliest malignancies. Kidney cancer (KC) is a common malignancy globally. Chemo- or radio-therapies are not very effective to control PC or KC, and overdoses often cause severe site reactions to the patients. As a result, novel treatment strategies with high efficacy but without toxic side effects are urgently desired. Secoisolariciresinol diglucoside (SDG) belongs to plant lignans with potential anticancer activities, but clinical evidence is not available in PC or KC treatment. Patient Concerns: We report a rare case of an 83-year-old female patient with pancreatic and kidney occupying lesions that lacked the conditions to receive surgery or chemo- or radiotherapy. Diagnosis: Pancreatic and kidney cancers. Interventions: We gave dietary SDG to the patient as the only therapeutics. Outcomes: SDG effectively halted progression of both PC and KC. All clinical manifestations, including bad insomnia, loss of appetite, stomach symptoms, and skin itching over the whole body, all disappeared. The initial massive macroscopic hematuria became microscopic and infrequent, and other laboratory results also gradually returned to normal. Most of the cancer biomarkers, initially high such as CEA, CA199, CA724, CA125, came down rapidly, among which CA199 changed most radically. This patient has had progression-free survival of one year so far. Conclusion: These results demonstrate the potent inhibitory effects of SDG on PC and KC of this patient and provide promising novel therapeutics for refractory malignant tumors.

2.
Phytother Res ; 37(10): 4722-4739, 2023 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-37443453

RESUMO

Epithelial ovarian cancer (EOC) is the most common and fatal subtype of ovarian malignancies, with no effective therapeutics available. Our previous studies have demonstrated extraordinary suppressive efficacy of enterolactone (ENL) on EOC. A chemotherapeutic agent, trabectedin (Trabe), is shown to be effective on ovarian cancer, especially when combined with other therapeutics, such as pegylated liposomal doxorubicin or oxaliplatin. Thrombospondin 1 (THBS1), a kind of matrix glycoprotein, plays important roles against cancer development through inhibiting angiogenesis but whether it is involved in the suppression of EOC by ENL or Trabe remains unknown. To test combined suppressive effects of ENL and Trabe on EOC and possible involvement of THBS1 in the anticancer activities of ENL and Trabe. The EOC cell line ES-2 was transfected with overexpressed THBS1 by lentivirus vector. We employed tube formation assay to evaluate the anti-angiogenesis activity of ENL and of its combined use with Trabe after THBS1 overexpression and established drug intervention and xenograft nude mouse cancer models to assess the in vivo effects of the hypothesized synergistic suppression between the agents and the involvement of THBS1. Mouse fecal samples were collected for 16S rDNA sequencing and microbiota analysis. We detected strong inhibitory activities of ENL and Trabe against the proliferation and migration of cancer cells and observed synergistic effects between ENL and Trabe in suppressing EOC. ENL and Trabe, given either separately or in combination, could suppress the tube formation capability of human microvascular endothelial cells, and this inhibitory effect became even stronger with THBS1 overexpression. In the ENL plus Trabe combination group, the expression of tissue inhibitor of metalloproteinases 3 and cluster of differentiation 36 was both upregulated, whereas matrix metalloproteinase 9, vascular endothelial growth factor, and cluster of differentiation 47 were all decreased. With the overexpression of THBS1, the results became even more pronounced. In animal experiments, combined use of ENL and Trabe showed superior inhibitory effects to either single agent and significantly suppressed tumor growth, and the overexpression of THBS1 further enhanced the anti-cancer activities of the drug combination group. ENL and Trabe synergistically suppress EOC and THBS1 could remarkably facilitate the synergistic anticancer effects of ENL and Trabe.


Assuntos
Neoplasias Ovarianas , Trombospondina 1 , Animais , Camundongos , Humanos , Feminino , Carcinoma Epitelial do Ovário , Trabectedina/uso terapêutico , Trombospondina 1/uso terapêutico , Fator A de Crescimento do Endotélio Vascular , Células Endoteliais/metabolismo , Neoplasias Ovarianas/tratamento farmacológico , Neoplasias Ovarianas/patologia , Linhagem Celular Tumoral , Proliferação de Células/genética
3.
Front Microbiol ; 14: 1126808, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37143538

RESUMO

Many lines of evidence demonstrate the associations of colorectal cancer (CRC) with intestinal microbial dysbiosis. Recent reports have suggested that maintaining the homeostasis of microbiota and host might be beneficial to CRC patients, but the underlying mechanisms remain unclear. In this study, we established a CRC mouse model of microbial dysbiosis and evaluated the effects of fecal microbiota transplantation (FMT) on CRC progression. Azomethane and dextran sodium sulfate were used to induce CRC and microbial dysbiosis in mice. Intestinal microbes from healthy mice were transferred to CRC mice by enema. The vastly disordered gut microbiota of CRC mice was largely reversed by FMT. Intestinal microbiota from normal mice effectively suppressed cancer progression as assessed by measuring the diameter and number of cancerous foci and significantly prolonged survival of the CRC mice. In the intestine of mice that had received FMT, there were massive infiltration of immune cells, including CD8+ T and CD49b+ NK, which is able to directly kill cancer cells. Moreover, the accumulation of immunosuppressive cells, Foxp3+ Treg cells, seen in the CRC mice was much reduced after FMT. Additionally, FMT regulated the expressions of inflammatory cytokines in CRC mice, including down-regulation of IL1a, IL6, IL12a, IL12b, IL17a, and elevation of IL10. These cytokines were positively correlated with Azospirillum_sp._47_25, Clostridium_sensu_stricto_1, the E. coli complex, Akkermansia, Turicibacter, and negatively correlated with Muribaculum, Anaeroplasma, Candidatus_Arthromitus, and Candidatus Saccharimonas. Furthermore, the repressed expressions of TGFb, STAT3 and elevated expressions of TNFa, IFNg, CXCR4 together promoted the anti-cancer efficacy. Their expressions were positively correlated with Odoribacter, Lachnospiraceae-UCG-006, Desulfovibrio, and negatively correlated with Alloprevotella, Ruminococcaceae UCG-014, Ruminiclostridium, Prevotellaceae UCG-001 and Oscillibacter. Our studies indicate that FMT inhibits the development of CRC by reversing gut microbial disorder, ameliorating excessive intestinal inflammation and cooperating with anti-cancer immune responses.

4.
Curr Res Food Sci ; 5: 1720-1731, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36238813

RESUMO

In this study, we investigated the dynamics of microbial community and flavor metabolites during the traditional fermentation of Hongqu aromatic vinegar (HAV) and subsequently explored the potential relationship between microbiota and flavor metabolites. The microbiome analysis based on high-throughput sequencing (HTS) of amplicons demonstrated that Lactobacillus, Acetobacter and Clostridium were the dominant bacterial genera, while Alternaria, Candida, Aspergillus and Issatchenkia were the dominant fungal genera during the acetic acid fermentation (AAF) of HAV. A total of 101 volatile flavor compounds were identified through gas chromatography-mass spectrometry (GC-MS) during HAV fermentation, including esters (35), alcohols (17), aldehydes (11), acids (11), ketones (7), phenols (10), and others (10). Redundancy analysis (RDA) was used to reveal the correlation between microbiota and volatile flavor compounds. Lactobacillus and Acetobacter were the two bacterial genera that have the great influence on the production of volatile flavor components in HAV. Among them, Lactobacillus was positively correlated with a variety of ethyl esters, while Acetobacter positively contributed to the formation of several organic acids. Furthermore, the non-volatile metabolites were detected by ultra-high-performance liquid chromatography with quadrupole time-of-flight mass spectrometry (UPLC-QTOF/MS). A total of 41 dipeptides were identified during HAV fermentation, and most of them may have sensory characteristics and biological activities. RDA showed that Aspergillus, Epicoccum, Issatchenkia, Candida and Malassezia were the most influential fungal genera on non-volatile metabolites. In particular, Epicoccum was first reported in Hongqu vinegar and showed a positive correlation with the production of various organic acids. In conclusion, this study provides a scientific basis for understanding the flavor generation mechanism of HAV, and may be valuable for developing effective techniques to select suitable strains to improve the flavor quality of HAV.

5.
Invest New Drugs ; 38(5): 1373-1382, 2020 10.
Artigo em Inglês | MEDLINE | ID: mdl-32734371

RESUMO

Cancer is one of the leading causes of death worldwide, but effective therapies remain the topic of many research activities. Many recent studies have thus focused on particular gut microbiota due to their important roles in treating cancers, but very few microbes of therapeutic value have been reported. In this study, we isolated four bacterial strains, BY38, BY40, BY43 and BY45, from the fecal specimens of healthy individuals and cancer patients. The treatment of cancer cells with the products of these cultured bacteria induced significant inhibitory effects on the proliferation of ovarian cancer cells and colorectal cancer cells in a dose-dependent manner. A phylogenetic analysis showed that the four anticancer strains belong to the genus Bacillus, and flow cytometry assays indicated that the inhibitory effects might be achieved through the induction of cell apoptosis. These results suggest that these bacteria could be novel and promising anticancer agents against cancers.


Assuntos
Antineoplásicos/farmacologia , Bacillus/metabolismo , Produtos Biológicos/farmacologia , Microbioma Gastrointestinal , Neoplasias/tratamento farmacológico , Adulto , Apoptose/efeitos dos fármacos , Linhagem Celular Tumoral , Sobrevivência Celular/efeitos dos fármacos , Fezes/microbiologia , Genoma Bacteriano , Humanos , Pessoa de Meia-Idade , Filogenia , Sequenciamento Completo do Genoma
6.
BMC Med Genomics ; 13(1): 59, 2020 04 06.
Artigo em Inglês | MEDLINE | ID: mdl-32252754

RESUMO

BACKGROUND: Escherichia coli are mostly commensals but also contain pathogenic lineages. It is largely unclear whether the commensal E. coli as the potential origins of pathogenic lineages may consist of monophyletic or polyphyletic populations, elucidation of which is expected to lead to novel insights into the associations of E. coli diversity with human health and diseases. METHODS: Using genomic sequencing and pulsed field gel electrophoresis (PFGE) techniques, we analyzed E. coli from the intestinal microbiota of three groups of healthy individuals, including preschool children, university students, and seniors of a longevity village, as well as colorectal cancer (CRC) patients, to probe the commensal E. coli populations for their diversity. RESULTS: We delineated the 2280 fresh E. coli isolates from 185 subjects into distinct genome types (genotypes) by PFGE. The genomic diversity of the sampled E. coli populations was so high that a given subject may have multiple genotypes of E. coli, with the general diversity within a host going up from preschool children through university students to seniors. Compared to the healthy subjects, the CRC patients had the lowest diversity level among their E. coli isolates. Notably, E. coli isolates from CRC patients could suppress the growth of E. coli bacteria isolated from healthy controls under nutrient-limited culture conditions. CONCLUSIONS: The coexistence of multiple E. coli lineages in a host may help create and maintain a microbial environment that is beneficial to the host. As such, the low diversity of E. coli bacteria may be associated with unhealthy microenvironment in the intestine and hence facilitate the pathogenesis of diseases such as CRC.


Assuntos
Neoplasias Colorretais/patologia , DNA Bacteriano/análise , Infecções por Escherichia coli/complicações , Escherichia coli/classificação , Escherichia coli/genética , Variação Genética , Adolescente , Adulto , Idoso , Criança , Pré-Escolar , China/epidemiologia , Neoplasias Colorretais/epidemiologia , Neoplasias Colorretais/microbiologia , DNA Bacteriano/genética , Infecções por Escherichia coli/microbiologia , Feminino , Genótipo , Humanos , Masculino , Pessoa de Meia-Idade , Filogenia , Microambiente Tumoral , Adulto Jovem
7.
BMC Genomics ; 20(1): 930, 2019 Dec 04.
Artigo em Inglês | MEDLINE | ID: mdl-31801462

RESUMO

BACKGROUND: Salmonella bongori infect mainly cold-blooded hosts, but infections by S. bongori in warm-blooded hosts have been reported. We hypothesized that S. bongori might have diverged into distinct phylogenetic lineages, with some being able to infect warm-blooded hosts. RESULTS: To inspect the divergence status of S. bongori, we first completely sequenced the parakeet isolate RKS3044 and compared it with other sequenced S. bongori strains. We found that RKS3044 contained a novel T6SS encoded in a pathogenicity island-like structure, in addition to a T6SS encoded in SPI-22, which is common to all S. bongori strains so far reported. This novel T6SS resembled the SPI-19 T6SS of the warm-blooded host infecting Salmonella Subgroup I lineages. Genomic sequence comparisons revealed different genomic sequence amelioration events among the S. bongori strains, including a unique CTAG tetranucleotide degeneration pattern in RKS3044, suggesting non-overlapping gene pools between RKS3044 and other S. bongori lineages/strains leading to their independent accumulation of genomic variations. We further proved the existence of a clear-cut genetic boundary between RKS3044 and the other S. bongori lineages/strains analyzed in this study. CONCLUSIONS: The warm-blooded host-infecting S. bongori strain RKS3044 has diverged with distinct genomic features from other S. bongori strains, including a novel T6SS encoded in a previously not reported pathogenicity island-like structure and a unique genomic sequence degeneration pattern. These findings alert cautions about the emergence of new pathogens originating from non-pathogenic ancestors by acquiring specific pathogenic traits.


Assuntos
Ilhas Genômicas , Periquitos/microbiologia , Salmonella/classificação , Sequenciamento Completo do Genoma/métodos , Animais , Evolução Molecular , Especiação Genética , Tamanho do Genoma , Genoma Bacteriano , Humanos , Filogenia , Salmonella/genética , Salmonella/patogenicidade , Fatores de Virulência/genética
8.
Artigo em Inglês | MEDLINE | ID: mdl-31885637

RESUMO

The hypoglycemic decoction (HD) is a traditional Chinese medicine (TCM) preparation for the treatment of diabetes mellitus (DM), with a remarkable therapeutic effect. However, its mechanism of action is still unclear at the metabolic level. In this study, the biochemical markers from type 2 DM (T2DM) rats, induced by a high-sugar and high-fat diet combined with streptozotocin (STZ), were detected. The metabolomics-based analysis using high-performance liquid chromatography coupled with tandem mass spectrometry (HPLC-MS/MS) was conducted to evaluate urine samples from control, model, metformin, and HD groups. After oral administration of HD for 28 days, the general state, weight, fasting blood glucose (FBG), blood lipid level, oral glucose tolerance test (OGTT), fasting insulin (FINS), insulin sensitivity index (ISI), and homeostasis model assessment of insulin resistance (HOMA-IR) were significantly improved (P < 0.01). The western blotting showed that HD can enhance the protein expression of glucose transporter 4 (GLUT4) and adenosine monophosphate-activated protein kinase (AMPK). The metabolomics results revealed that after treatment with HD, the levels of L-carnitine, 1-methyladenosine, 1-methylhistamine, and 3-indoleacrylic acid were upregulated and the levels of riboflavin, phenylalanine, atrolactic acid, 2-oxoglutarate, citrate, isocitrate, cortisol, and glucose were downregulated. The main mechanism may be closely related to the regulation of the tricarboxylic acid (TCA) cycle, phenylalanine metabolism, glyoxylate metabolism, and dicarboxylate metabolism. Additionally, it was also found that HD can regulate the protein expression of GLUT4 and AMPK to interfere with TCA cycle and carbohydrate metabolism to treat T2DM.

9.
Math Biosci Eng ; 16(5): 6047-6070, 2019 06 29.
Artigo em Inglês | MEDLINE | ID: mdl-31499752

RESUMO

In this paper, we investigate the dynamics of a stochastic SIRS epidemic model with non-linear incidence rate and transfer from infectious to susceptible. Firstly, the existence and uniqueness of global positive solution of the model with any positive initial value are proved. Next, sufficient conditions for extinction and persistence of the disease are established. It is found that a large noise intensity has the effect of suppressing the epidemic. At last, some numerical simulations are introduced to demonstrate the theoretical results. Our results generalize and improve the existing results.


Assuntos
Infecções Bacterianas/epidemiologia , Doenças Transmissíveis/epidemiologia , Suscetibilidade a Doenças/epidemiologia , Epidemias , Viroses/epidemiologia , Algoritmos , Infecções Bacterianas/imunologia , Simulação por Computador , Humanos , Incidência , Dinâmica não Linear , Probabilidade , Processos Estocásticos , Viroses/imunologia
10.
Mol Genet Genomics ; 294(3): 597-605, 2019 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-30710177

RESUMO

Antimicrobial resistance makes pathogenic bacteria hard to control, but little is known about the general processes of resistance gain or loss. Here, we compared distinct S. typhimurium DT104 strains resistant to zero, two, five, or more of the tested antimicrobials. We found that common resistance phenotypes could be encoded by distinct genes, on SGI-1 or plasmid. We also demonstrated close clonality among all the tested non-resistant and differently resistant DT104 strains, demonstrating dynamic acquisition or loss (by total deletion or gradual decaying of multi-drug resistance gene clusters) of the genetic traits. These findings reflect convergent processes to make the bacteria resistant to multiple antimicrobials by acquiring the needed traits from stochastically available origins. When the antimicrobial stress is absent, the resistance genes may be dropped off quickly, so the bacteria can save the cost for maintaining unneeded genes. Therefore, this work reiterates the importance of strictly controlled use of antimicrobials.


Assuntos
Adaptação Fisiológica/genética , Farmacorresistência Bacteriana Múltipla/genética , Evolução Molecular , Salmonella typhimurium/genética , Estresse Fisiológico , Adaptação Fisiológica/efeitos dos fármacos , Antibacterianos/farmacologia , Sequência de Bases , Farmacorresistência Bacteriana Múltipla/efeitos dos fármacos , Genes Bacterianos/genética , Genoma Bacteriano/genética , Filogenia , Plasmídeos/classificação , Plasmídeos/genética , Salmonella typhimurium/classificação , Salmonella typhimurium/efeitos dos fármacos , Homologia de Sequência do Ácido Nucleico
11.
Sci Rep ; 7(1): 10985, 2017 09 08.
Artigo em Inglês | MEDLINE | ID: mdl-28887484

RESUMO

When bacteria diverge, they need to adapt to the new environments, such as new hosts or different tissues of the same host, by accumulating beneficial genomic variations, but a general scenario is unknown due to the lack of appropriate methods. Here we profiled the ACTAGT sequence and its degenerated forms (i.e., hexa-nucleotide sequences with one of the six nucleotides different from ACTAGT) in Salmonella to estimate the nucleotide amelioration processes of bacterial genomes. ACTAGT was mostly located in coding sequences but was also found in several intergenic regions, with its degenerated forms widely scattered throughout the bacterial genomes. We speculated that the distribution of ACTAGT and its degenerated forms might be lineage-specific as a consequence of different selection pressures imposed on ACTAGT at different genomic locations (in genes or intergenic regions) among different Salmonella lineages. To validate this speculation, we modelled the secondary structures of the ACTAGT-containing sequences conserved across Salmonella and many other enteric bacteria. Compared to ACTAGT at conserved regions, the degenerated forms were distributed throughout the bacterial genomes, with the degeneration patterns being highly similar among bacteria of the same phylogenetic lineage but radically different across different lineages. This finding demonstrates biased amelioration under distinct selection pressures among the bacteria and provides insights into genomic evolution during bacterial divergence.


Assuntos
Genes Bacterianos , Salmonella/genética , Substituição de Aminoácidos , Escherichia coli/genética , Evolução Molecular , Variação Genética , Genômica , Conformação de Ácido Nucleico , Salmonella/classificação , Seleção Genética
12.
Oncotarget ; 8(30): 49574-49591, 2017 Jul 25.
Artigo em Inglês | MEDLINE | ID: mdl-28484095

RESUMO

Cancer as a large group of complex diseases is believed to result from the interactions of numerous genetic and environmental factors but may develop in people without any known genetic or environmental risks, suggesting the existence of other powerful factors to influence the carcinogenesis process. Much attention has been focused recently on particular members of the intestinal microbiota for their potential roles in promoting carcinogenesis. Here we report the identification and characterization of intestinal bacteria that exhibited potent anti-malignancy activities on a broad range of solid cancers and leukemia. We collected fecal specimens from healthy individuals of different age groups (preschool children and university students), inspected their effects on cancer cells, and obtained bacteria with potent anti-malignancy activities. The bacteria mostly belonged to Actinobacteria but also included lineages of other phyla such as Proteobacteria and Firmicutes. In animal cancer models, sterile culture supernatant from the bacteria highly effectively inhibited tumor growth. Remarkably, intra-tumor administration of the bacterial products prevented metastasis and even cleared cancer cells at remote locations from the tumor site. This work demonstrates the prevalent existence of potent malignancy-killers in the human intestinal microbiota, which may routinely clear malignant cells from the body before they form cancers.


Assuntos
Microbioma Gastrointestinal , Neoplasias/etiologia , Adolescente , Adulto , Animais , Bactérias/classificação , Bactérias/genética , Fenômenos Fisiológicos Bacterianos , Sobrevivência Celular , Criança , Pré-Escolar , Modelos Animais de Doenças , Fezes/microbiologia , Feminino , Cromatografia Gasosa-Espectrometria de Massas , Células HeLa , Humanos , Masculino , Metagenoma , Metagenômica/métodos , Camundongos , Neoplasias/patologia , Filogenia , RNA Ribossômico 16S/genética , Adulto Jovem
13.
Sci Rep ; 7: 43565, 2017 03 06.
Artigo em Inglês | MEDLINE | ID: mdl-28262684

RESUMO

Highly conserved short sequences help identify functional genomic regions and facilitate genomic annotation. We used Salmonella as the model to search the genome for evolutionarily conserved regions and focused on the tetranucleotide sequence CTAG for its potentially important functions. In Salmonella, CTAG is highly conserved across the lineages and large numbers of CTAG-containing short sequences fall in intergenic regions, strongly indicating their biological importance. Computer modeling demonstrated stable stem-loop structures in some of the CTAG-containing intergenic regions, and substitution of a nucleotide of the CTAG sequence would radically rearrange the free energy and disrupt the structure. The postulated degeneration of CTAG takes distinct patterns among Salmonella lineages and provides novel information about genomic divergence and evolution of these bacterial pathogens. Comparison of the vertically and horizontally transmitted genomic segments showed different CTAG distribution landscapes, with the genome amelioration process to remove CTAG taking place inward from both terminals of the horizontally acquired segment.


Assuntos
Sequência Conservada , DNA Intergênico , Motivos de Nucleotídeos , Sequências Repetitivas de Ácido Nucleico , Salmonella/genética , Evolução Molecular , Genoma Bacteriano , Genômica/métodos , Conformação de Ácido Nucleico , Filogenia
14.
Shanghai Kou Qiang Yi Xue ; 25(4): 391-395, 2016 Aug.
Artigo em Chinês | MEDLINE | ID: mdl-27858058

RESUMO

PURPOSE: To study the expression and possible role of OPG/RANK/RANKLin the rat dental pulp of periodontitis combined with vascular calcification. METHODS: Thirty-six male Wister rats were randomly divided into 4 groups: control group(group C), periodontitis group(group CP), vascular calcification group(group VDN) and compound group(group CP+VDN). Each group underwent corresponding management to establish animal model. When the model was successful, the maxillae including molars were sectioned, pulp tissue was examined by H-E staining; Immunohistochemical staining method was used to evaluate the expression and ratio of OPG and RANKL in pulp tissues. Statistical analysis was carried out using SPSS 19.0 software package. RESULTS: The pulp tissue of group CP, VDN, CP+VDN showed varied degrees of damage, neutrophil infiltration, pulp vascular congestion, odontoblasts vacuolar changes, pulp necrosis by H-E staining, and the changes in CP+VDN group was the most significant, followed by CP group, VDN group. Immunohistochemistry showed OPG in pulp tissues in group CP, VDN, CP+VDN were significantly lower than that in normal group (P<0.05), and the expression in group CP+VDN was the least;Expression of RANKL in pulp tissues in group CP, VDN, CP+VDN were significantly higher than that in normal group(P<0.05),and the expression in group CP+VDN was the highest. The ratio of OPG/RANKL in normal group was the highest, and the ratio in CP+VDN group was the lowest. CONCLUSIONS: Periodontitis and vascular calcification can damage the pulp tissue, periodontitis compound with vascular calcification may aggravate the injury; OPG/RANKL/RANK system may play an important role in pulp tissue injury.


Assuntos
Polpa Dentária , Osteoprotegerina , Periodontite , Ligante RANK , Calcificação Vascular , Animais , Modelos Animais de Doenças , Imuno-Histoquímica , Inflamação , Masculino , Dente Molar , Ratos , Ratos Wistar
15.
Int J Infect Dis ; 49: 134-40, 2016 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-27343985

RESUMO

BACKGROUND: The bacterial genus Salmonella encompasses a large number of serotypes that are genetically very similar but biologically quite different, especially in pathogenic properties and host specificity. Serotyping has been used for the classification, identification, and epidemiological investigation due to its excellent discriminating power, but it cannot distinguish the different pathogenic lineages within a polyphyletic serotype. Additionally, very few institutions have the comprehensive set of antisera for typing. Therefore various studies have been performed to explore alternative assays to differentiate Salmonella isolates, such as the search for genes that can be used as potential molecular substitutes for serotyping. However, the genes tested so far have often given inconsistent results. METHODS: In this study, the discriminating power of seven genes to differentiate 309 Salmonella strains representing 26 serotypes was evaluated and the results were compared with those of other methods. RESULTS: The seven newly selected genes have a good power to differentiate different serovars. The tree based on the concatenated sequences of these genes revealed phylogenetic relationships of the bacteria consistent with that of the whole genome tree. CONCLUSION: Individual Salmonella lineages each have specific genes that can be used to differentiate Salmonella isolates on a phylogenetic basis.


Assuntos
Salmonella/classificação , Salmonella/genética , Genótipo , Humanos , Filogenia , Sorotipagem
16.
Stand Genomic Sci ; 10: 30, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26203341

RESUMO

Salmonella arizonae (also called Salmonella subgroup IIIa) is a Gram-negative, non-spore-forming, motile, rod-shaped, facultatively anaerobic bacterium. S. arizonae strain RKS2983 was isolated from a human in California, USA. S. arizonae lies somewhere between Salmonella subgroups I (human pathogens) and V (also called S. bongori; usually non-pathogenic to humans) and so is an ideal model organism for studies of bacterial evolution from non-human pathogen to human pathogens. We hence sequenced the genome of RKS2983 for clues of genomic events that might have led to the divergence and speciation of Salmonella into distinct lineages with diverse host ranges and pathogenic features. The 4,574,836 bp complete genome contains 4,203 protein-coding genes, 82 tRNA genes and 7 rRNA operons. This genome contains several characteristics not reported to date in Salmonella subgroup I or V and may provide information about the genetic divergence of Salmonella pathogens.

17.
Am J Cancer Res ; 5(2): 726-37, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25973310

RESUMO

Factors within the tissue of breast cancer (BC) may shift the polarization of CD4+ T cells towards Th2 direction. This tendency can promote tumor development and be enhanced by the use of tamoxifen during the treatment. Thus, the patients with low levels of tumor-induced Th2 polarization prior to tamoxifen treatment may better endure the immune-polarizing side effects (IPSE) of tamoxifen and have better prognoses. Estimation of Th2 polarization status should help predict the IPSE among tamoxifen-treated patients and guide the use of tamoxifen among all BC patients before the tamoxifen therapy. Here, we report profiling of differentially expressed (DE) intratumoral cytokines as a signature to evaluate the IPSE of tamoxifen. The DE genes of intratumoral CD4+ T cells (CD4 DEGs) were identified by gene expression profiles of purified CD4+ T cells from BC patients and validated by profiling of cultured intratumoral CD4+ T cells. Functional enrichment analyses showed a directed Th2 polarization of intratumoral CD4+ T cells. To find the factors inducing the Th2 polarization of CD4+ T cells, we identified 995 common DE genes of bulk BC tissues (BC DEGs) by integrating five independent datasets. Five DE cytokines observed in bulk BC tissues with dysregulated receptors in the intratumoral CD4+ T cells were selected as the predictor of the IPSE of tamoxifen. The patients predicted to suffer low IPSE (low Th2 polarization) had a significantly lower distant relapse risk than the patients predicted to suffer high IPSE in independent datasets (n = 608; HR = 4.326, P = 0.000897; HR = 2.014, P = 0.0173; HR = 2.72, P = 0.04077). Patients predicted to suffer low IPSE would benefit from tamoxifen treatment (HR = 2.908, P = 0.03905). The DE intratumoral cytokines identified in this study may help predict the IPSE of tamoxifen and justify the use of tamoxifen in BC treatment.

18.
J Phys Chem B ; 119(18): 5896-903, 2015 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-25906053

RESUMO

We investigate the performance of van der Waals (vdW) functions in predicting the elastic constants of ß cyclotetramethylene tetranitramine (HMX) energetic molecular crystals using density functional theory (DFT) calculations. We confirm that the accuracy of the elastic constants is significantly improved using the vdW corrections with environment-dependent C6 together with PBE and revised PBE exchange-correlation functionals. The elastic constants obtained using PBE-D3(0) calculations yield the most accurate mechanical response of ß-HMX when compared with experimental stress-strain data. Our results suggest that PBE-D3 calculations are reliable in predicting the elastic constants of this material.

19.
Sci Total Environ ; 502: 16-21, 2015 Jan 01.
Artigo em Inglês | MEDLINE | ID: mdl-25240101

RESUMO

An improved physically constrained source apportionment (PCSA) technology using the Multilinear Engine 2-species ratios (ME2-SR) method was proposed and applied to quantify the sources of PM10- and PM2.5-associated polycyclic aromatic hydrocarbons (PAHs) from Chengdu in winter time. Sixteen priority PAH compounds were detected with mean ΣPAH concentrations (sum of 16 PAHs) ranging from 70.65 ng/m(3) to 209.58 ng/m(3) and from 59.17 ng/m(3) to 170.64 ng/m(3) for the PM10 and PM2.5 samples, respectively. The ME2-SR and positive matrix factorization (PMF) models were employed to estimate the source contributions of PAHs, and these estimates agreed with the experimental results. For the PMF model, the highest contributor to the ΣPAHs was vehicular emission (81.69% for PM10, 82.06% for PM2.5), followed by coal combustion (12.68%, 12.11%), wood combustion (5.65%, 4.45%) and oil combustion (0.72%, 0.88%). For the ME2-SR method, the highest contributions were from diesel (43.19% for PM10, 47.17% for PM2.5) and gasoline exhaust (34.94%, 32.44%), followed by wood combustion (8.79%, 6.37%), coal combustion (12.46%, 12.37%) and oil combustion (0.80%, 1.22%). However, the PAH ratios calculated for the factors extracted by ME2-SR were closer to the values from actual source profiles, implying that the results obtained from ME2-SR might be physically constrained and satisfactory.


Assuntos
Poluentes Atmosféricos/análise , Poluição do Ar/estatística & dados numéricos , Monitoramento Ambiental/métodos , Modelos Químicos , Material Particulado/análise , Hidrocarbonetos Policíclicos Aromáticos/análise , Emissões de Veículos/análise
20.
J Hazard Mater ; 283: 462-8, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-25464284

RESUMO

PM10 and PM2.5 samples were simultaneously collected during a one-year monitoring period in Chengdu. The concentrations of 16 particle-bound polycyclic aromatic hydrocarbons (Σ16PAHs) were measured. Σ16PAHs concentrations varied from 16.85 to 160.24 ng m(-3) and 14.93 to 111.04ngm(-3) for PM10 and PM2.5, respectively. Three receptor models (principal component analysis (PCA), positive matrix factorization (PMF), and Multilinear Engine 2 (ME2)) were applied to investigate the sources and contributions of PAHs. The results obtained from the three receptor models were compared. Diesel emissions, gasoline emissions, and coal and wood combustion were the primary sources. Source apportionment results indicated that these models were able to track the ΣPAHs. For the first time, the cancer risks for each identified source were quantitatively calculated for ingestion and dermal contact routes by combining the incremental lifetime cancer risk (ILCR) values with the estimated source contributions. The results showed that gasoline emissions posed the highest cancer risk, even though it contributed less to Σ16PAHs. The results and method from this work can provide useful information for quantifying the toxicity of source categories and studying human health in the future.


Assuntos
Poluentes Atmosféricos/análise , Carcinógenos/análise , Monitoramento Ambiental , Hidrocarbonetos Policíclicos Aromáticos/análise , China , Humanos , Modelos Teóricos , Neoplasias/epidemiologia , Material Particulado/análise , Análise de Componente Principal , Medição de Risco , Emissões de Veículos/análise
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